Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02081.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1994
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32


Found at i:145 original size:2 final size:2

Alignment explanation


    Indices: 138--172  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

        128 TCTGATCTAA

                                                                
        138 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A

        173 AAAGGGGGAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Found at i:1626 original size:3 final size:3

Alignment explanation


    Indices: 1618--1665  Score: 53
    Period size: 3  Copynumber: 16.0  Consensus size: 3

       1608 AAGATGAAGT

                                          *   *     *                   
       1618 GAA GAA GAA GAA GAA GAA GAA GAT GAG GAA AAA GAA -AA GGAA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -GAA GAA

               
       1663 GAA
          1 GAA

       1666 TAAAAGGGCT


Statistics
Matches: 38,  Mismatches: 5, Indels: 4
        0.81            0.11        0.09

Matches are distributed among these distances:
   2    2  0.05
   3   34  0.89
   4    2  0.05

ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02


Consensus pattern (3 bp):   
GAA

Done.