Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02083.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 427

Length: 712
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.33


Found at i:210 original size:18 final size:18

Alignment explanation


    Indices: 182--268  Score: 147
    Period size: 18  Copynumber: 4.8  Consensus size: 18

        172 CTATCATTGT

                  *           
        182 TCTTCCACCACTTCCTAA
          1 TCTTCCGCCACTTCCTAA

            *                 
        200 CCTTCCGCCACTTCCTAA
          1 TCTTCCGCCACTTCCTAA

                  *           
        218 TCTTCCACCACTTCCTAA
          1 TCTTCCGCCACTTCCTAA

                              
        236 TCTTCCGCCACTTCCTAA
          1 TCTTCCGCCACTTCCTAA

                           
        254 TCTTCCGCCACTTCC
          1 TCTTCCGCCACTTCC

        269 CAGATTACCA


Statistics
Matches: 64,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  18   64  1.00

ACGTcount: A:0.17, C:0.47, G:0.03, T:0.32


Consensus pattern (18 bp):   
TCTTCCGCCACTTCCTAA

Found at i:312 original size:54 final size:54

Alignment explanation


    Indices: 254--430  Score: 291
    Period size: 54  Copynumber: 3.3  Consensus size: 54

        244 CACTTCCTAA

                  *                          *                **  
        254 TCTTCCGCCACTTCCCAGATTACCAATTCCACCGCTTCCTAACCCTACCATTGT
          1 TCTTCCACCACTTCCCAGATTACCAATTCCACCACTTCCTAACCCTACCACCGT

                        *                                         
        308 TCTTCCACCACTCCCCAGATTACCAATTCCACCACTTCCTAACCCTACCACCGT
          1 TCTTCCACCACTTCCCAGATTACCAATTCCACCACTTCCTAACCCTACCACCGT

                             * *                                  
        362 TCTTCCACCACTTCCCATAGTACCAATTCCACCACTTCCTAACCCTACCACCGT
          1 TCTTCCACCACTTCCCAGATTACCAATTCCACCACTTCCTAACCCTACCACCGT

                           
        416 TCTTCCACCACTTCC
          1 TCTTCCACCACTTCC

        431 TCCTATATTG


Statistics
Matches: 115,  Mismatches: 8, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  54  115  1.00

ACGTcount: A:0.22, C:0.46, G:0.05, T:0.27


Consensus pattern (54 bp):   
TCTTCCACCACTTCCCAGATTACCAATTCCACCACTTCCTAACCCTACCACCGT
Done.