Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02089.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4339
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:1730 original size:6 final size:6

Alignment explanation


    Indices: 1719--1755  Score: 56
    Period size: 6  Copynumber: 6.2  Consensus size: 6

       1709 TTTTCTTGGT

                    *                           *      
       1719 TAGGAA TGGGAA TAGGAA TAGGAA TAGGAA TTGGAA T
          1 TAGGAA TAGGAA TAGGAA TAGGAA TAGGAA TAGGAA T

       1756 CCCACTGCTT


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.43, C:0.00, G:0.35, T:0.22


Consensus pattern (6 bp):   
TAGGAA

Done.