Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02107.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8816
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36


Found at i:4798 original size:18 final size:18

Alignment explanation


    Indices: 4775--4810  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       4765 AACAGGTAAT

                              
       4775 AAAGATAAAGGAGGAAAC
          1 AAAGATAAAGGAGGAAAC

                              
       4793 AAAGATAAAGGAGGAAAC
          1 AAAGATAAAGGAGGAAAC

       4811 GAATCAAGTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.61, C:0.06, G:0.28, T:0.06


Consensus pattern (18 bp):   
AAAGATAAAGGAGGAAAC

Found at i:8194 original size:28 final size:28

Alignment explanation


    Indices: 8163--8216  Score: 108
    Period size: 28  Copynumber: 1.9  Consensus size: 28

       8153 TACACATAGG

                                        
       8163 ATTATTACATTGTAAAGAACTTGATAAC
          1 ATTATTACATTGTAAAGAACTTGATAAC

                                      
       8191 ATTATTACATTGTAAAGAACTTGATA
          1 ATTATTACATTGTAAAGAACTTGATA

       8217 CTCTACACTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37


Consensus pattern (28 bp):   
ATTATTACATTGTAAAGAACTTGATAAC
Done.