Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02117.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6651
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Found at i:181 original size:18 final size:17

Alignment explanation


    Indices: 160--196  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 17

        150 TAACGGAACC

                              
        160 AAAAAAATAAAAAAATAA
          1 AAAAAAATAAAAAAA-AA

                             
        178 AAAAAAATAAAAAAAAA
          1 AAAAAAATAAAAAAAAA

              
        195 AA
          1 AA

        197 GCAGAGAAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17    4  0.21
  18   15  0.79

ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08


Consensus pattern (17 bp):   
AAAAAAATAAAAAAAAA

Found at i:195 original size:11 final size:10

Alignment explanation


    Indices: 160--194  Score: 56
    Period size: 10  Copynumber: 3.7  Consensus size: 10

        150 TAACGGAACC

                      
        160 AAAAAAAT--
          1 AAAAAAATAA

                      
        168 AAAAAAATAA
          1 AAAAAAATAA

                      
        178 AAAAAAATAA
          1 AAAAAAATAA

                   
        188 AAAAAAA
          1 AAAAAAA

        195 AAGCAGAGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   8    8  0.32
  10   17  0.68

ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09


Consensus pattern (10 bp):   
AAAAAAATAA
Done.