Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00062.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3933
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:1993 original size:16 final size:17

Alignment explanation


    Indices: 1972--2010  Score: 55
    Period size: 17  Copynumber: 2.4  Consensus size: 17

       1962 GATATAATAC

                              
       1972 TTAAATT-TTTTT-ATAT
          1 TTAAATTATTTTTGA-AT

                             
       1988 TTAAATTATTTTTGAAT
          1 TTAAATTATTTTTGAAT

                  
       2005 TTAAAT
          1 TTAAAT

       2011 ATGGGACTTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    7  0.33
  17   13  0.62
  18    1  0.05

ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62


Consensus pattern (17 bp):   
TTAAATTATTTTTGAAT

Done.