Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g02126.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2461
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Found at i:2044 original size:186 final size:186
Alignment explanation
Indices: 1722--2097 Score: 545
Period size: 186 Copynumber: 2.0 Consensus size: 186
1712 CTATTATGCA
*
1722 TATGCCGATCTTAAGCCCCCTACATCACCATCTCCTAGAGCACCAACAAATGCACCAGCAGACAG
1 TATGCCGATCTTAAGCCCCCTACAACACCATCTCCTAGAGCACCAACAAATGCACCAGCAGACAG
* * *
1787 TGGGTCCAAAGGTGATACATTGTCAGGAAACAGCACAGCTCAATCTCCAATAGCTGAGAAACCAG
66 TGGGTCCAAAGGTGATACATTATCAGGAAACAGCACAGCTCAATCTCCAATAGCAGAGAAACCAA
* * *
1852 GTGATGAACAGCCTGATACCAAACCAACACCAAGACCACTTTCTCCTTTTGCTATG
131 GTGATGAACAGCATAATACCAAACCAACACCAAGACCACTTTCTCCTTTTGCAATG
* * * *** ** *
1908 TATGCCGATCTTAAGCCTCCTTCAACGCCATCTCCTAGAGCACCAACTTCTGCACCAGTGGATAG
1 TATGCCGATCTTAAGCCCCCTACAACACCATCTCCTAGAGCACCAACAAATGCACCAGCAGACAG
** * * * * *
1973 TGGGTCTGAAGGTGCTACATTATCAGGAAATAGCACAGCTCAATCTTCTATAGCAGATAAACCAA
66 TGGGTCCAAAGGTGATACATTATCAGGAAACAGCACAGCTCAATCTCCAATAGCAGAGAAACCAA
2038 GTGATGAACAGCATAATACCAAACCAACACCAAGACCACTTTCTCCTTTTGCAATG
131 GTGATGAACAGCATAATACCAAACCAACACCAAGACCACTTTCTCCTTTTGCAATG
2094 TATG
1 TATG
2098 AGGACTTGAA
Statistics
Matches: 167, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
186 167 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (186 bp):
TATGCCGATCTTAAGCCCCCTACAACACCATCTCCTAGAGCACCAACAAATGCACCAGCAGACAG
TGGGTCCAAAGGTGATACATTATCAGGAAACAGCACAGCTCAATCTCCAATAGCAGAGAAACCAA
GTGATGAACAGCATAATACCAAACCAACACCAAGACCACTTTCTCCTTTTGCAATG
Done.