Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02127.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3134
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26


Found at i:2233 original size:375 final size:375

Alignment explanation


    Indices: 1543--2294  Score: 1504
    Period size: 375  Copynumber: 2.0  Consensus size: 375

       1533 ATCGTATGAT

                                                                             
       1543 TGAGGGACACCTAAAGTTTGATCCCAGTGTAATGGAGCCTGTAAGTGAGAGAGATGCTGGAACTG
          1 TGAGGGACACCTAAAGTTTGATCCCAGTGTAATGGAGCCTGTAAGTGAGAGAGATGCTGGAACTG

                                                                             
       1608 AACTATTTGATAACAAGCATTACCGAGAGATTGAAGCAGATGATGCAGTAGACGAAGATGATGGT
         66 AACTATTTGATAACAAGCATTACCGAGAGATTGAAGCAGATGATGCAGTAGACGAAGATGATGGT

                                                                             
       1673 GAACAAGACGATCAAGAGAACGAAGCTTTTGAAACCACGGAACTAGTTTCAGAAGGACCTGATGA
        131 GAACAAGACGATCAAGAGAACGAAGCTTTTGAAACCACGGAACTAGTTTCAGAAGGACCTGATGA

                                                                             
       1738 AGTACAGCAAGGAATTGAGGTTGAGATGATTGAACTAGATCATTTAGAGACAGAGGAGAGCAAAG
        196 AGTACAGCAAGGAATTGAGGTTGAGATGATTGAACTAGATCATTTAGAGACAGAGGAGAGCAAAG

                                                                             
       1803 GTGTTGAATTTGCTGTTGAGATGCAAGCTGAACTTCAGAGCAATGTGGACACTGAAAACCAGCAA
        261 GTGTTGAATTTGCTGTTGAGATGCAAGCTGAACTTCAGAGCAATGTGGACACTGAAAACCAGCAA

                                                              
       1868 AGTGTGATCTCACCGCAGGCTAGTGTAATTCAACATGATGGCTTGAACAA
        326 AGTGTGATCTCACCGCAGGCTAGTGTAATTCAACATGATGGCTTGAACAA

                                                                             
       1918 TGAGGGACACCTAAAGTTTGATCCCAGTGTAATGGAGCCTGTAAGTGAGAGAGATGCTGGAACTG
          1 TGAGGGACACCTAAAGTTTGATCCCAGTGTAATGGAGCCTGTAAGTGAGAGAGATGCTGGAACTG

                                                                             
       1983 AACTATTTGATAACAAGCATTACCGAGAGATTGAAGCAGATGATGCAGTAGACGAAGATGATGGT
         66 AACTATTTGATAACAAGCATTACCGAGAGATTGAAGCAGATGATGCAGTAGACGAAGATGATGGT

                                                                             
       2048 GAACAAGACGATCAAGAGAACGAAGCTTTTGAAACCACGGAACTAGTTTCAGAAGGACCTGATGA
        131 GAACAAGACGATCAAGAGAACGAAGCTTTTGAAACCACGGAACTAGTTTCAGAAGGACCTGATGA

                                                                             
       2113 AGTACAGCAAGGAATTGAGGTTGAGATGATTGAACTAGATCATTTAGAGACAGAGGAGAGCAAAG
        196 AGTACAGCAAGGAATTGAGGTTGAGATGATTGAACTAGATCATTTAGAGACAGAGGAGAGCAAAG

                                                                             
       2178 GTGTTGAATTTGCTGTTGAGATGCAAGCTGAACTTCAGAGCAATGTGGACACTGAAAACCAGCAA
        261 GTGTTGAATTTGCTGTTGAGATGCAAGCTGAACTTCAGAGCAATGTGGACACTGAAAACCAGCAA

                                                              
       2243 AGTGTGATCTCACCGCAGGCTAGTGTAATTCAACATGATGGCTTGAACAA
        326 AGTGTGATCTCACCGCAGGCTAGTGTAATTCAACATGATGGCTTGAACAA

              
       2293 TG
          1 TG

       2295 TGGACACTGA


Statistics
Matches: 377,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 375  377  1.00

ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22


Consensus pattern (375 bp):   
TGAGGGACACCTAAAGTTTGATCCCAGTGTAATGGAGCCTGTAAGTGAGAGAGATGCTGGAACTG
AACTATTTGATAACAAGCATTACCGAGAGATTGAAGCAGATGATGCAGTAGACGAAGATGATGGT
GAACAAGACGATCAAGAGAACGAAGCTTTTGAAACCACGGAACTAGTTTCAGAAGGACCTGATGA
AGTACAGCAAGGAATTGAGGTTGAGATGATTGAACTAGATCATTTAGAGACAGAGGAGAGCAAAG
GTGTTGAATTTGCTGTTGAGATGCAAGCTGAACTTCAGAGCAATGTGGACACTGAAAACCAGCAA
AGTGTGATCTCACCGCAGGCTAGTGTAATTCAACATGATGGCTTGAACAA
Done.