Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02128.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1937
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34


Found at i:1871 original size:99 final size:99

Alignment explanation


    Indices: 1696--1896  Score: 384
    Period size: 99  Copynumber: 2.0  Consensus size: 99

       1686 ATTACTTAAC

                                                                        *    
       1696 TTCCATAATTACTGACTGGTATGAATGCCCTTTGATCAAGTCACTAAAGTATGGGTGGTTCATTA
          1 TTCCATAATTACTGACTGGTATGAATGCCCTTTGATCAAGTCACTAAAGTATGGGTGGTTAATTA

                  *                           
       1761 CATTTTGGCCCTATAATACTTGTGATTGATTCTG
         66 CATTTTAGCCCTATAATACTTGTGATTGATTCTG

                                                                             
       1795 TTCCATAATTACTGACTGGTATGAATGCCCTTTGATCAAGTCACTAAAGTATGGGTGGTTAATTA
          1 TTCCATAATTACTGACTGGTATGAATGCCCTTTGATCAAGTCACTAAAGTATGGGTGGTTAATTA

                                              
       1860 CATTTTAGCCCTATAATACTTGTGATTGATTCTG
         66 CATTTTAGCCCTATAATACTTGTGATTGATTCTG

               
       1894 TTC
          1 TTC

       1897 TAGAAACAAG


Statistics
Matches: 100,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  99  100  1.00

ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39


Consensus pattern (99 bp):   
TTCCATAATTACTGACTGGTATGAATGCCCTTTGATCAAGTCACTAAAGTATGGGTGGTTAATTA
CATTTTAGCCCTATAATACTTGTGATTGATTCTG
Done.