Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02139.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 345

Length: 576
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32


Found at i:287 original size:15 final size:15

Alignment explanation


    Indices: 234--288  Score: 71
    Period size: 15  Copynumber: 3.9  Consensus size: 15

        224 TCCACCACCG

                       *   
        234 GGATATCCTCCACAA
          1 GGATATCCTCCTCAA

                           
        249 GGATA---TCCTCAA
          1 GGATATCCTCCTCAA

              *            
        261 GGTTATCCTCCTCAA
          1 GGATATCCTCCTCAA

                         
        276 GGATATCCTCCTC
          1 GGATATCCTCCTC

        289 CTTACGCCCC


Statistics
Matches: 34,  Mismatches: 3, Indels: 6
        0.79            0.07        0.14

Matches are distributed among these distances:
  12   10  0.29
  15   24  0.71

ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27


Consensus pattern (15 bp):   
GGATATCCTCCTCAA
Done.