Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02146.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1630
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:1271 original size:77 final size:77

Alignment explanation


    Indices: 1176--1377  Score: 395
    Period size: 77  Copynumber: 2.6  Consensus size: 77

       1166 TATGGTGAGA

                                                                             
       1176 TTCTTAAATTCATTATGGTTTTCTTAACCTCTACCGAAAGGCGAGTTTGCTTCTGTTTTATCTGC
          1 TTCTTAAATTCATTATGGTTTTCTTAACCTCTACCGAAAGGCGAGTTTGCTTCTGTTTTATCTGC

                        
       1241 AGTCAGGCATTG
         66 AGTCAGGCATTG

                                                                             
       1253 TTCTTAAATTCATTATGGTTTTCTTAACCTCTACCGAAAGGCGAGTTTGCTTCTGTTTTATCTGC
          1 TTCTTAAATTCATTATGGTTTTCTTAACCTCTACCGAAAGGCGAGTTTGCTTCTGTTTTATCTGC

                        
       1318 AGTCAGGCATTG
         66 AGTCAGGCATTG

                  *                                         
       1330 TTCTTACATTCATTATGGTTTTCTTAACCTCTACCGAAAGGCGAGTTT
          1 TTCTTAAATTCATTATGGTTTTCTTAACCTCTACCGAAAGGCGAGTTT

       1378 ATCGATCATT


Statistics
Matches: 124,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  77  124  1.00

ACGTcount: A:0.21, C:0.20, G:0.17, T:0.42


Consensus pattern (77 bp):   
TTCTTAAATTCATTATGGTTTTCTTAACCTCTACCGAAAGGCGAGTTTGCTTCTGTTTTATCTGC
AGTCAGGCATTG
Done.