Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02153.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28


Found at i:639 original size:12 final size:12

Alignment explanation


    Indices: 622--653  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        612 AAGGCGGAAA

                        
        622 CATCACCACCAC
          1 CATCACCACCAC

                        
        634 CATCACCACCAC
          1 CATCACCACCAC

              *     
        646 CACCACCA
          1 CATCACCA

        654 ACAACAACAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.34, C:0.59, G:0.00, T:0.06


Consensus pattern (12 bp):   
CATCACCACCAC
Done.