Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g02159.F5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2292
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Found at i:1784 original size:11 final size:11
Alignment explanation
Indices: 1768--1792 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1758 AATTTATCGC
1768 TTATATTATAT
1 TTATATTATAT
1779 TTATATTATAT
1 TTATATTATAT
1790 TTA
1 TTA
1793 ATTTGAAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTATATTATAT
Found at i:2048 original size:51 final size:51
Alignment explanation
Indices: 1924--2056 Score: 121
Period size: 51 Copynumber: 2.6 Consensus size: 51
1914 ATATTGATAG
1924 AATATGTAAATATTGTAAAA--TAACA-TTGTTAAATCATGACCAAATTGACAA
1 AATATGTAAATA-T-TAAAAGTTAA-ATTTGTTAAATCATGACCAAATTGACAA
* *** * * *
1975 AATATGTAAATGTTATGGGTTAAATTTGTTAAATCAAT-ATCAAGTTGACAG
1 AATATGTAAATATTAAAAGTTAAATTTGTTAAATC-ATGACCAAATTGACAA
* *
2026 GATATGTAAATATTAAAAGTTAATTTTGTTA
1 AATATGTAAATATTAAAAGTTAAATTTGTTA
2057 CTATATCGAT
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
49 2 0.03
50 2 0.03
51 59 0.91
52 2 0.03
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.37
Consensus pattern (51 bp):
AATATGTAAATATTAAAAGTTAAATTTGTTAAATCATGACCAAATTGACAA
Done.