Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02193.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3632
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:888 original size:20 final size:20

Alignment explanation


    Indices: 846--889  Score: 54
    Period size: 20  Copynumber: 2.2  Consensus size: 20

        836 AAAAAAATCA

                           *  * 
        846 TGGTCTAGTTTGTGTTATGT
          1 TGGTCTAGTTTGTGTGATAT

                                 
        866 TGGTCTAGTTTGAT-TGATAT
          1 TGGTCTAGTTTG-TGTGATAT

                
        886 TGGT
          1 TGGT

        890 GGAGGGAGAC


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  20   20  0.95
  21    1  0.05

ACGTcount: A:0.14, C:0.05, G:0.30, T:0.52


Consensus pattern (20 bp):   
TGGTCTAGTTTGTGTGATAT
Done.