Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02195.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 986

Length: 1644
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27


Found at i:312 original size:12 final size:12

Alignment explanation


    Indices: 281--314  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        271 ATGTACACTT

                   *    
        281 CCCCACCCCCAC
          1 CCCCACCTCCAC

                        
        293 CCCCACCTCCAC
          1 CCCCACCTCCAC

             *        
        305 CTCCACCTCC
          1 CCCCACCTCC

        315 TCCGCCACCA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.15, C:0.76, G:0.00, T:0.09


Consensus pattern (12 bp):   
CCCCACCTCCAC

Found at i:322 original size:18 final size:18

Alignment explanation


    Indices: 301--338  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        291 ACCCCCACCT

                 *            
        301 CCACCTCCACCTCCTCCG
          1 CCACCACCACCTCCTCCG

                    *         
        319 CCACCACCTCCTCCTCCG
          1 CCACCACCACCTCCTCCG

              
        337 CC
          1 CC

        339 TCCATGTAAG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.11, C:0.68, G:0.05, T:0.16


Consensus pattern (18 bp):   
CCACCACCACCTCCTCCG
Done.