Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00699.M3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3710
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:3385 original size:51 final size:51

Alignment explanation


    Indices: 3236--3494  Score: 437
    Period size: 51  Copynumber: 5.0  Consensus size: 51

       3226 TCCATGGGAA

                                          *                    
       3236 AATTAGGGGTCCTGAAAGGCTGTGTTCCTTGCACAATGGCAAAACTATGTC
          1 AATTAGGGGTCCTGAAAGGCTGTGTTCCTTACACAATGGCAAAACTATGTC

                                                                 
       3287 AATTAGGGGTCCTGAAAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
          1 AATTAGGGGTCCTGAAAGGC--TGTGTTCCTTACACAATGGCAAAACTATGTC

                    *                          *               
       3340 AATTAGGGTTCCTGAAAGGCTGTGTTCCTTACACAGTGGCAAAACTATGTC
          1 AATTAGGGGTCCTGAAAGGCTGTGTTCCTTACACAATGGCAAAACTATGTC

                                       *                 *     
       3391 AATTAGGGGTCCTGAAAGGCTGTGTTCTTTACACAATGGCAAAACCATGTC
          1 AATTAGGGGTCCTGAAAGGCTGTGTTCCTTACACAATGGCAAAACTATGTC

                                                                 
       3442 AATTAGGGGTCCTGAAAGGCTGTGTATTCCTTACACAATGGCAAAACTATGTC
          1 AATTAGGGGTCCTGAAAGGCTGTG--TTCCTTACACAATGGCAAAACTATGTC

       3495 TTAATTTCAG


Statistics
Matches: 195,  Mismatches: 9, Indels: 6
        0.93            0.04        0.03

Matches are distributed among these distances:
  51  121  0.62
  53   74  0.38

ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28


Consensus pattern (51 bp):   
AATTAGGGGTCCTGAAAGGCTGTGTTCCTTACACAATGGCAAAACTATGTC

Found at i:3472 original size:104 final size:103

Alignment explanation


    Indices: 3236--3494  Score: 439
    Period size: 104  Copynumber: 2.5  Consensus size: 103

       3226 TCCATGGGAA

                                          *                                  
       3236 AATTAGGGGTCCTGAAAGGCTGTGTTCCTTGCACAATGGCAAAACTATGTCAATTAGGGGTCCTG
          1 AATTAGGGGTCCTGAAAGGCTGTGTTCCTTACACAATGGCAAAACTATGTCAATTAGGGGTCCTG

                                             *     
       3301 AAAGGCTGTGTGTTCCTTACACAATGGCAAAACTATGTC
         66 AAAGGC-GTGTGTTCCTTACACAATGGCAAAACCATGTC

                    *                          *                             
       3340 AATTAGGGTTCCTGAAAGGCTGTGTTCCTTACACAGTGGCAAAACTATGTCAATTAGGGGTCCTG
          1 AATTAGGGGTCCTGAAAGGCTGTGTTCCTTACACAATGGCAAAACTATGTCAATTAGGGGTCCTG

                          *                       
       3405 AAAGGC-TGTGTTCTTTACACAATGGCAAAACCATGTC
         66 AAAGGCGTGTGTTCCTTACACAATGGCAAAACCATGTC

                                                                 
       3442 AATTAGGGGTCCTGAAAGGCTGTGTATTCCTTACACAATGGCAAAACTATGTC
          1 AATTAGGGGTCCTGAAAGGCTGTG--TTCCTTACACAATGGCAAAACTATGTC

       3495 TTAATTTCAG


Statistics
Matches: 146,  Mismatches: 7, Indels: 4
        0.93            0.04        0.03

Matches are distributed among these distances:
 102   52  0.36
 104   94  0.64

ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28


Consensus pattern (103 bp):   
AATTAGGGGTCCTGAAAGGCTGTGTTCCTTACACAATGGCAAAACTATGTCAATTAGGGGTCCTG
AAAGGCGTGTGTTCCTTACACAATGGCAAAACCATGTC
Done.