Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02223.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2388
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.34


Found at i:2264 original size:7 final size:7

Alignment explanation


    Indices: 2254--2278  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       2244 TTGCAGCGTG

                   
       2254 CATCGAT
          1 CATCGAT

                   
       2261 CATCGAT
          1 CATCGAT

                   
       2268 CATCGAT
          1 CATCGAT

                
       2275 CATC
          1 CATC

       2279 TGTATTGATG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.28, C:0.32, G:0.12, T:0.28


Consensus pattern (7 bp):   
CATCGAT
Done.