Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02223.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1850
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27


Found at i:1451 original size:7 final size:7

Alignment explanation


    Indices: 1441--1465  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       1431 TTGCAGCGTG

                   
       1441 CATCGAT
          1 CATCGAT

                   
       1448 CATCGAT
          1 CATCGAT

                   
       1455 CATCGAT
          1 CATCGAT

                
       1462 CATC
          1 CATC

       1466 TGTATTGATG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.28, C:0.32, G:0.12, T:0.28


Consensus pattern (7 bp):   
CATCGAT
Done.