Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Ga03g02223.F3 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 733 Length: 1223 ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24 Found at i:1099 original size:7 final size:7 Alignment explanation
Indices: 1089--1113 Score: 50 Period size: 7 Copynumber: 3.6 Consensus size: 7 1079 TTGCAGCGTG 1089 CATCGAT 1 CATCGAT 1096 CATCGAT 1 CATCGAT 1103 CATCGAT 1 CATCGAT 1110 CATC 1 CATC 1114 TGTATTGATG Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 18 1.00 ACGTcount: A:0.28, C:0.32, G:0.12, T:0.28 Consensus pattern (7 bp): CATCGAT Done.