Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02224.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1500
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35


Found at i:1176 original size:107 final size:107

Alignment explanation


    Indices: 1041--1258  Score: 323
    Period size: 107  Copynumber: 2.0  Consensus size: 107

       1031 AAGTTGTTTG

                                            *                    *           
       1041 AGCTGAGTATAACTGAGCTCAAATTCAGCTTGTCCAATAGTTCGAGCTTGGCTTGATAATTATTG
          1 AGCTGAGTATAACTGAGCTCAAATTCAGCTTGACCAATAGTTCGAGCTTGGCTCGATAATTATTG

                *                 *                   
       1106 AGTCGAGTTCAAGTTTTTCT-TCGAACATAAGTAGTTTGGGA
         66 AGTCAAGTTCAAGTTTTTCTGTAGAACATAAGTAGTTTGGGA

                      *                                 *                    
       1147 AGCTGAGTATTAC-GAAGCCTCAAATTCAGCTTGACCAATAGTTTGAGCTTGGCTCGATAATTAT
          1 AGCTGAGTATAACTG-AG-CTCAAATTCAGCTTGACCAATAGTTCGAGCTTGGCTCGATAATTAT

                                                           
       1211 TGAGTCAAGTTCAAGTTTTTCTCGAGTAGAACATAAGTAGTTTGGGA
         64 TGAGTCAAGTTCAAGTTTTTCT---GTAGAACATAAGTAGTTTGGGA

             
       1258 A
          1 A

       1259 CCAGTGTCTT


Statistics
Matches: 100,  Mismatches: 6, Indels: 7
        0.88            0.05        0.06

Matches are distributed among these distances:
 105    1  0.01
 106   14  0.14
 107   64  0.64
 111   21  0.21

ACGTcount: A:0.29, C:0.15, G:0.22, T:0.33


Consensus pattern (107 bp):   
AGCTGAGTATAACTGAGCTCAAATTCAGCTTGACCAATAGTTCGAGCTTGGCTCGATAATTATTG
AGTCAAGTTCAAGTTTTTCTGTAGAACATAAGTAGTTTGGGA
Done.