Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02232.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1826
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24


Found at i:848 original size:66 final size:66

Alignment explanation


    Indices: 742--934  Score: 275
    Period size: 66  Copynumber: 3.0  Consensus size: 66

        732 TGAAGACAAC

                      *                                *                  *  
        742 GATGATTCTGCATCCATGAATGCTGAAAGTGCAAAGGGAGAAGTGAAAGAAGAGGAAAAGGAGGA
          1 GATGATTCTGAATCCATGAATGCTGAAAGTGCAAAGGGAGAAGAGAAAGAAGAGGAAAAGGAAGA

             
        807 A
         66 A

                      *                                    *                 
        808 GATGATTCTGTATCCATGAATGCTGAAAGTGCAAAGGGAGAAGAGAATGAAGAGGAAAAGGAAGA
          1 GATGATTCTGAATCCATGAATGCTGAAAGTGCAAAGGGAGAAGAGAAAGAAGAGGAAAAGGAAGA

             
        873 A
         66 A

                          ** *          * *                                 
        874 GATGATTCTGAATCTTTAAATGCTGAAAATTCAAA---AGAAGAGAAAGAAGAGGAAAAGGAAG
          1 GATGATTCTGAATCCATGAATGCTGAAAGTGCAAAGGGAGAAGAGAAAGAAGAGGAAAAGGAAG

        935 GGGAGCAGGA


Statistics
Matches: 116,  Mismatches: 11, Indels: 3
        0.89            0.08        0.02

Matches are distributed among these distances:
  63   25  0.22
  66   91  0.78

ACGTcount: A:0.45, C:0.08, G:0.30, T:0.17


Consensus pattern (66 bp):   
GATGATTCTGAATCCATGAATGCTGAAAGTGCAAAGGGAGAAGAGAAAGAAGAGGAAAAGGAAGA
A

Done.