Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02238.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2107
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:50 original size:3 final size:3

Alignment explanation


    Indices: 42--89  Score: 60
    Period size: 3  Copynumber: 16.0  Consensus size: 3

         32 CTTTCTTTCT

                                     ** *                            *     
         42 TTC TTC TTC TTC TTC TTC TAG ATC TTC TTC TTC TTC TTC TTC TAC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

         90 CTTTACAATG


Statistics
Matches: 37,  Mismatches: 8, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.06, C:0.31, G:0.02, T:0.60


Consensus pattern (3 bp):   
TTC

Done.