Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00699.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1338
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29


Found at i:1259 original size:19 final size:19

Alignment explanation


    Indices: 1235--1274  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1225 TTCTTTGTGG

                               
       1235 CTGGAAAACTATTATGTTT
          1 CTGGAAAACTATTATGTTT

                               
       1254 CTGGAAAACTATTATGTTT
          1 CTGGAAAACTATTATGTTT

              
       1273 CT
          1 CT

       1275 TTGTGGCTGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42


Consensus pattern (19 bp):   
CTGGAAAACTATTATGTTT

Found at i:1292 original size:27 final size:27

Alignment explanation


    Indices: 1254--1338  Score: 161
    Period size: 27  Copynumber: 3.1  Consensus size: 27

       1244 TATTATGTTT

                                       
       1254 CTGGAAAACTATTATGTTTCTTTGTGG
          1 CTGGAAAACTATTATGTTTCTTTGTGG

                                       
       1281 CTGGAAAACTATTATGTTTCTTTGTGG
          1 CTGGAAAACTATTATGTTTCTTTGTGG

                    *                  
       1308 CTGGAAAATTATTATGTTTCTTTGTGG
          1 CTGGAAAACTATTATGTTTCTTTGTGG

                
       1335 CTGG
          1 CTGG


Statistics
Matches: 57,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  27   57  1.00

ACGTcount: A:0.21, C:0.11, G:0.24, T:0.45


Consensus pattern (27 bp):   
CTGGAAAACTATTATGTTTCTTTGTGG
Done.