Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02241.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1258
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27


Found at i:892 original size:120 final size:121

Alignment explanation


    Indices: 676--899  Score: 317
    Period size: 120  Copynumber: 1.8  Consensus size: 121

        666 TGTAAGCTTC

                           *                                    *            
        676 CGGTCCACTGAGAGCGTCGGTTCGGTTTCGAGCTCGAGGAGGAGAGGACCGGTTTCGGCTCACGA
          1 CGGTCCACTGAGAGCATCGGTTCGGTTTCGAGCTC--GGAGGAGAGGACCGGATTCGGCTCACGA

             *                 *              *                       
        741 GTTGAATCATGATGTTTTGTATGGGAAAGAACCGGAGGACGTGAAGAATGCAAGTTTT
         64 GCTGAATCATGATGTTTTGCATGGGAAAGAACCGAAGGACGTGAAGAATGCAAGTTTT

                 *                       *                                   
        799 CGGTCTACTGAGAGCATCGGTTCGGTTTCTAGAC-C-GAGGAGAGGACCGGATTCGGCTCACGAG
          1 CGGTCCACTGAGAGCATCGGTTCGGTTTCGAG-CTCGGAGGAGAGGACCGGATTCGGCTCACGAG

                  **  *                           
        862 CTGAATTGTGCTGTTTTGCATGGGAAAGAACCGAAGGA
         65 CTGAATCATGATGTTTTGCATGGGAAAGAACCGAAGGA

        900 TGTAAAAAAT


Statistics
Matches: 90,  Mismatches: 10, Indels: 5
        0.86            0.10        0.05

Matches are distributed among these distances:
 120   59  0.66
 123   30  0.33
 124    1  0.01

ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24


Consensus pattern (121 bp):   
CGGTCCACTGAGAGCATCGGTTCGGTTTCGAGCTCGGAGGAGAGGACCGGATTCGGCTCACGAGC
TGAATCATGATGTTTTGCATGGGAAAGAACCGAAGGACGTGAAGAATGCAAGTTTT
Done.