Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00701.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 551

Length: 919
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:61 original size:6 final size:6

Alignment explanation


    Indices: 52--84  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

         42 ATACGATCTT

                 *                                
         52 CCCTTT CCCTTC CCCTTC CCCTTC CCCTTC CCC
          1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCC

         85 CATCATTTTC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33


Consensus pattern (6 bp):   
CCCTTC

Done.