Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00702.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 938

Length: 1564
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34


Found at i:600 original size:89 final size:89

Alignment explanation


    Indices: 493--655  Score: 290
    Period size: 89  Copynumber: 1.8  Consensus size: 89

        483 CACCTACAAA

                                                *         *                  
        493 TCCTACCTGTGCCTGTATGTATTTAAGGTTAACAGGTATTTTGAATTAGTATTAACTATAAATAG
          1 TCCTACCTGTGCCTGTATGTATTTAAGGTTAACAGGCATTTTGAATCAGTATTAACTATAAATAG

            *                       
        558 TTCATTTTTAATTATTTATATTTG
         66 ATCATTTTTAATTATTTATATTTG

                 *                                                           
        582 TCCTAGCTGTGCCTGTATGTATTTAAGGTTAACAGGCATTTTGAATCAGTATTAACTATAAATAG
          1 TCCTACCTGTGCCTGTATGTATTTAAGGTTAACAGGCATTTTGAATCAGTATTAACTATAAATAG

                     
        647 ATCATTTTT
         66 ATCATTTTT

        656 TGAATCACGG


Statistics
Matches: 70,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  89   70  1.00

ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44


Consensus pattern (89 bp):   
TCCTACCTGTGCCTGTATGTATTTAAGGTTAACAGGCATTTTGAATCAGTATTAACTATAAATAG
ATCATTTTTAATTATTTATATTTG
Done.