Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02310.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1336
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Found at i:106 original size:3 final size:3

Alignment explanation


    Indices: 98--138  Score: 55
    Period size: 3  Copynumber: 13.7  Consensus size: 3

         88 CCTACTTTCG

                                                * *         *     
         98 TTC TTC TTC TTC TTC TTC TTC TTC TTC ATA TTC TTC ATC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT

        139 TATCAGAAAA


Statistics
Matches: 32,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.07, C:0.29, G:0.00, T:0.63


Consensus pattern (3 bp):   
TTC

Done.