Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02311.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1190
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34


Found at i:1032 original size:25 final size:25

Alignment explanation


    Indices: 1004--1055  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        994 TTTGGTCAAA

                                     
       1004 TTTGATTTTAGTCCCTGTATTATGC
          1 TTTGATTTTAGTCCCTGTATTATGC

                                     
       1029 TTTGATTTTAGTCCCTGTATTATGC
          1 TTTGATTTTAGTCCCTGTATTATGC

              
       1054 TT
          1 TT

       1056 AAATTTGATA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54


Consensus pattern (25 bp):   
TTTGATTTTAGTCCCTGTATTATGC

Found at i:1071 original size:31 final size:28

Alignment explanation


    Indices: 1000--1072  Score: 98
    Period size: 25  Copynumber: 2.6  Consensus size: 28

        990 TAGGTTTGGT

                                        
       1000 CAAATTTGATTTTAGTCCCTGTATTATG
          1 CAAATTTGATTTTAGTCCCTGTATTATG

                                        
       1028 C---TTTGATTTTAGTCCCTGTATTATG
          1 CAAATTTGATTTTAGTCCCTGTATTATG

                                
       1053 CTTAAATTTGATATTTAGTC
          1 C--AAATTTGAT-TTTAGTC

       1073 TTAGACATTA


Statistics
Matches: 39,  Mismatches: 0, Indels: 9
        0.81            0.00        0.19

Matches are distributed among these distances:
  25   25  0.64
  28    1  0.03
  30    6  0.15
  31    7  0.18

ACGTcount: A:0.23, C:0.14, G:0.14, T:0.49


Consensus pattern (28 bp):   
CAAATTTGATTTTAGTCCCTGTATTATG
Done.