Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00709.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 331

Length: 553
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:212 original size:3 final size:3

Alignment explanation


    Indices: 204--245  Score: 59
    Period size: 3  Copynumber: 14.0  Consensus size: 3

        194 CAATATCAGA

                                                       *            
        204 TCT TCT TCTT TCT T-T TCT TCT TCT TCT TCT TCA TCT TCT TCT
          1 TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT

        246 GCTGCTGCTG


Statistics
Matches: 35,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
   2    2  0.06
   3   30  0.86
   4    3  0.09

ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67


Consensus pattern (3 bp):   
TCT

Done.