Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02363.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 805

Length: 1342
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24


Found at i:1288 original size:98 final size:98

Alignment explanation


    Indices: 1119--1313  Score: 266
    Period size: 98  Copynumber: 2.0  Consensus size: 98

       1109 ACCCTAACGG

                      *                      *             **            *   
       1119 TTTGTTCGATTAGCTGAAATTTGGTTGCTCGGTTAATTCGAGAATATTGCTATATTCATTGTTTG
          1 TTTGTTCGATGAGCTGAAATTTGGTTGCTCGGTAAATTCGAGAATATCACTATATTCATTGGTTG

                    *      *                 
       1184 TTTAAGATTATCATAGAATGTGTAGGAGCATGT
         66 TTTAAGATGATCATACAATGTGTAGGAGCATGT

                                   *     *                   *               
       1217 TTTGTTCGATGAGCTGAAATTTGTTTGCTTGGTAAATTCGAGAATATCATTATATGT-ATTGGTT
          1 TTTGTTCGATGAGCTGAAATTTGGTTGCTCGGTAAATTCGAGAATATCACTATAT-TCATTGGTT

                        *     *              
       1281 GTTTAAGATGATGATACATTGTGTAGGAGCATG
         65 GTTTAAGATGATCATACAATGTGTAGGAGCATG

       1314 CTTTCTTCAG


Statistics
Matches: 84,  Mismatches: 12, Indels: 2
        0.86            0.12        0.02

Matches are distributed among these distances:
  98   83  0.99
  99    1  0.01

ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42


Consensus pattern (98 bp):   
TTTGTTCGATGAGCTGAAATTTGGTTGCTCGGTAAATTCGAGAATATCACTATATTCATTGGTTG
TTTAAGATGATCATACAATGTGTAGGAGCATGT
Done.