Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02365.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3317
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34


Found at i:3124 original size:31 final size:30

Alignment explanation


    Indices: 3082--3159  Score: 84
    Period size: 31  Copynumber: 2.5  Consensus size: 30

       3072 AAAAAGCTCA

                  *        *          *   
       3082 ATATTCGATTTGGTATTTGAGCTTGGTTTT
          1 ATATTCAATTTGGTACTTGAGCTTGGCTTT

                         *        *        
       3112 GATATTCAATTTGTTACTTGAGTTTGGCTTT
          1 -ATATTCAATTTGGTACTTGAGCTTGGCTTT

                        *    
       3143 AGTATTCAATTTAGTAC
          1 A-TATTCAATTTGGTAC

       3160 CTAACATTTA


Statistics
Matches: 39,  Mismatches: 7, Indels: 2
        0.81            0.15        0.04

Matches are distributed among these distances:
  30    1  0.03
  31   38  0.97

ACGTcount: A:0.22, C:0.09, G:0.19, T:0.50


Consensus pattern (30 bp):   
ATATTCAATTTGGTACTTGAGCTTGGCTTT
Done.