Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02367.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 264

Length: 440
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33


Found at i:382 original size:19 final size:21

Alignment explanation


    Indices: 358--396  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        348 GTGCTGGTAG

                                 
        358 TTAATTA-TAA-GTATTTTTT
          1 TTAATTATTAATGTATTTTTT

                                
        377 TTAATTATTAATGTATTTTT
          1 TTAATTATTAATGTATTTTT

        397 CATGTTCGTG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19    7  0.39
  20    3  0.17
  21    8  0.44

ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64


Consensus pattern (21 bp):   
TTAATTATTAATGTATTTTTT

Done.