Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02374.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1215
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38


Found at i:1148 original size:16 final size:16

Alignment explanation


    Indices: 1129--1172  Score: 54
    Period size: 16  Copynumber: 2.8  Consensus size: 16

       1119 TTTTGTTGAG

                   *         
       1129 TCATTTTAGGTTT-AGA
          1 TCATTTTGGGTTTCA-A

                  *         
       1145 TCATTTCGGGTTTCAA
          1 TCATTTTGGGTTTCAA

                        
       1161 TCATTTTGGGTT
          1 TCATTTTGGGTT

       1173 ATTTGTTTGG


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  16   23  0.96
  17    1  0.04

ACGTcount: A:0.18, C:0.11, G:0.20, T:0.50


Consensus pattern (16 bp):   
TCATTTTGGGTTTCAA
Done.