Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02376.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30


Found at i:27 original size:2 final size:2

Alignment explanation


    Indices: 20--51  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

         10 TTTATAAAAA

                               *                           
         20 CT CT CT CT CT CT CC CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

         52 ATATATATAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47


Consensus pattern (2 bp):   
CT

Done.