Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00714.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1924
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:694 original size:18 final size:19

Alignment explanation


    Indices: 673--716  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 19

        663 GAAAAAGAAG

                        *      
        673 GAAAAGAAAGGAGATG-GA
          1 GAAAAGAAAGGAAATGAGA

                *              
        691 GAAATGAAAGGAAATGAGA
          1 GAAAAGAAAGGAAATGAGA

             *     
        710 GGAAAGA
          1 GAAAAGA

        717 GTGTTTTCTT


Statistics
Matches: 21,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  18   14  0.67
  19    7  0.33

ACGTcount: A:0.57, C:0.00, G:0.36, T:0.07


Consensus pattern (19 bp):   
GAAAAGAAAGGAAATGAGA
Done.