Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g02385.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2249
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Found at i:1481 original size:75 final size:75
Alignment explanation
Indices: 1376--1677 Score: 442
Period size: 75 Copynumber: 4.0 Consensus size: 75
1366 GGAACAACCT
*
1376 AATATGGGCCAGAGTACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
1441 ACCACCTCAA
66 ACCACCTCAA
* *
1451 AATATGGGCCAGGATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGAA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
1516 ACCACCTCAA
66 ACCACCTCAA
* * *
1526 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAATCCTGGTTCCAAAATCCGCCACGACA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
* *
1591 GCCACCACAA
66 ACCACCTCAA
* * * ** * * * *
1601 AATATGGGCCAGAATACAAGAGAGACAGTTAGGTCAGCACCCCAGTTCCCATATCAACAACGGCA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
*
1666 ACCACCCCAA
66 ACCACCTCAA
1676 AA
1 AA
1678 CATGAATGCT
Statistics
Matches: 203, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 203 1.00
ACGTcount: A:0.36, C:0.29, G:0.21, T:0.14
Consensus pattern (75 bp):
AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
ACCACCTCAA
Done.