Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g02385.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2048
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Found at i:1280 original size:75 final size:75
Alignment explanation
Indices: 1175--1476 Score: 442
Period size: 75 Copynumber: 4.0 Consensus size: 75
1165 GGAACAACCT
*
1175 AATATGGGCCAGAGTACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
1240 ACCACCTCAA
66 ACCACCTCAA
* *
1250 AATATGGGCCAGGATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGAA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
1315 ACCACCTCAA
66 ACCACCTCAA
* * *
1325 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAATCCTGGTTCCAAAATCCGCCACGACA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
* *
1390 GCCACCACAA
66 ACCACCTCAA
* * * ** * * * *
1400 AATATGGGCCAGAATACAAGAGAGACAGTTAGGTCAGCACCCCAGTTCCCATATCAACAACGGCA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
*
1465 ACCACCCCAA
66 ACCACCTCAA
1475 AA
1 AA
1477 CATGAATGCT
Statistics
Matches: 203, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 203 1.00
ACGTcount: A:0.36, C:0.29, G:0.21, T:0.14
Consensus pattern (75 bp):
AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
ACCACCTCAA
Done.