Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02392.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2445
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:1828 original size:18 final size:18

Alignment explanation


    Indices: 1807--1847  Score: 55
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       1797 CGTCATTGCT

                  *        *  
       1807 ATCATCGCCATCATTGTC
          1 ATCATCACCATCATTATC

                     *        
       1825 ATCATCACCGTCATTATC
          1 ATCATCACCATCATTATC

                 
       1843 ATCAT
          1 ATCAT

       1848 TGGACCAGGT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34


Consensus pattern (18 bp):   
ATCATCACCATCATTATC
Done.