Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02397.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3821
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30


Found at i:2469 original size:13 final size:13

Alignment explanation


    Indices: 2453--2477  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2443 CCTAAAAACC

                         
       2453 ACAAAAAAAAAAA
          1 ACAAAAAAAAAAA

                        
       2466 ACAAAAAAAAAA
          1 ACAAAAAAAAAA

       2478 CAAAAAGGAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00


Consensus pattern (13 bp):   
ACAAAAAAAAAAA

Found at i:2471 original size:11 final size:11

Alignment explanation


    Indices: 2457--2483  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

       2447 AAAACCACAA

                       
       2457 AAAAAAAAAAC
          1 AAAAAAAAAAC

                       
       2468 AAAAAAAAAAC
          1 AAAAAAAAAAC

                 
       2479 AAAAA
          1 AAAAA

       2484 GGATGGCGTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00


Consensus pattern (11 bp):   
AAAAAAAAAAC
Done.