Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02430.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3662
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33


Found at i:2542 original size:7 final size:7

Alignment explanation


    Indices: 2530--2559  Score: 51
    Period size: 7  Copynumber: 4.1  Consensus size: 7

       2520 CATGTTATTT

                   
       2530 TTTTGAA
          1 TTTTGAA

                   
       2537 TTTTGAA
          1 TTTTGAA

                   
       2544 TTTTGAA
          1 TTTTGAA

                    
       2551 TTTTTGAA
          1 -TTTTGAA

             
       2559 T
          1 T

       2560 ATTTATCATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   7   15  0.68
   8    7  0.32

ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60


Consensus pattern (7 bp):   
TTTTGAA

Found at i:2549 original size:14 final size:15

Alignment explanation


    Indices: 2530--2559  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2520 CATGTTATTT

                           
       2530 TTTTGAA-TTTTGAA
          1 TTTTGAATTTTTGAA

                           
       2544 TTTTGAATTTTTGAA
          1 TTTTGAATTTTTGAA

             
       2559 T
          1 T

       2560 ATTTATCATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    7  0.47
  15    8  0.53

ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60


Consensus pattern (15 bp):   
TTTTGAATTTTTGAA
Done.