Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02437.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2161
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27


Found at i:1674 original size:16 final size:16

Alignment explanation


    Indices: 1653--1685  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1643 GTTAAAAATT

                            
       1653 AATTTTTATACGAGAG
          1 AATTTTTATACGAGAG

                            
       1669 AATTTTTATACGAGAG
          1 AATTTTTATACGAGAG

             
       1685 A
          1 A

       1686 CATGTAACAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.39, C:0.06, G:0.18, T:0.36


Consensus pattern (16 bp):   
AATTTTTATACGAGAG
Done.