Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02442.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 844

Length: 1407
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27


Found at i:1401 original size:70 final size:70

Alignment explanation


    Indices: 1269--1407  Score: 179
    Period size: 70  Copynumber: 2.0  Consensus size: 70

       1259 ATTTGCAGCA

                                      *            *      *      **         *
       1269 TTGTAAATTTAGGTTTCCGTCCCCACGAAGAAACTATGTTGTTGATTTATAATTGGAAATTTCGT
          1 TTGTAAATTTAGGTTTCCGTCCCCACAAAGAAACTATGTCGTTGATCTATAATCAGAAATTTCGA

                 
       1334 TTTTT
         66 TTTTT

                  *              *  **                               *       
       1339 TTGTAAGTTTAGGTTTCCGTCTCCGTAAAGAAACTATGTCGTTGATCTATAATCAGAGATTTCGA
          1 TTGTAAATTTAGGTTTCCGTCCCCACAAAGAAACTATGTCGTTGATCTATAATCAGAAATTTCGA

                
       1404 TTTT
         66 TTTT


Statistics
Matches: 58,  Mismatches: 11, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  70   58  1.00

ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42


Consensus pattern (70 bp):   
TTGTAAATTTAGGTTTCCGTCCCCACAAAGAAACTATGTCGTTGATCTATAATCAGAAATTTCGA
TTTTT
Done.