Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02468.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822

Length: 1371
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22


Found at i:528 original size:15 final size:16

Alignment explanation


    Indices: 501--531  Score: 55
    Period size: 15  Copynumber: 2.0  Consensus size: 16

        491 ATGGTGATGA

                            
        501 AAACAAGTCTGAAGGT
          1 AAACAAGTCTGAAGGT

                            
        517 AAACAA-TCTGAAGGT
          1 AAACAAGTCTGAAGGT

        532 GGTAGCTCGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    9  0.60
  16    6  0.40

ACGTcount: A:0.45, C:0.13, G:0.23, T:0.19


Consensus pattern (16 bp):   
AAACAAGTCTGAAGGT
Done.