Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00721.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2079
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:1956 original size:20 final size:19

Alignment explanation


    Indices: 1917--1956  Score: 53
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1907 GTTTTTGTTT

                           *   
       1917 TTAAATTTAGAAAAATAAG
          1 TTAAATTTAGAAAAAGAAG

                *               
       1936 TTAATTTTAGAAAAACGAAG
          1 TTAAATTTAGAAAAA-GAAG

             
       1956 T
          1 T

       1957 GGTAAAAGTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  19   14  0.78
  20    4  0.22

ACGTcount: A:0.53, C:0.03, G:0.12, T:0.33


Consensus pattern (19 bp):   
TTAAATTTAGAAAAAGAAG
Done.