Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02499.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3100
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:100 original size:16 final size:16

Alignment explanation


    Indices: 81--112  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

         71 AAGAAAGAAA

                            
         81 AATAAAAGCTGGGTTT
          1 AATAAAAGCTGGGTTT

                            
         97 AATAAAAGCTGGGTTT
          1 AATAAAAGCTGGGTTT

        113 TTATGAGGTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31


Consensus pattern (16 bp):   
AATAAAAGCTGGGTTT
Done.