Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02509.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7786
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:2680 original size:47 final size:46

Alignment explanation


    Indices: 2629--2805  Score: 209
    Period size: 47  Copynumber: 3.8  Consensus size: 46

       2619 TGGTTGAGCA

                                                           
       2629 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
          1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG

                                          * *                
       2676 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
          1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G

                                       *              *   * 
       2721 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
          1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG

            *    *                               
       2769 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
          1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG

       2806 GCGGGTTACA


Statistics
Matches: 111,  Mismatches: 10, Indels: 19
        0.79            0.07        0.14

Matches are distributed among these distances:
  42    2  0.02
  43    1  0.01
  44    5  0.05
  45    1  0.01
  46   36  0.32
  47   57  0.51
  48    3  0.03
  50    4  0.04
  51    2  0.02

ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30


Consensus pattern (46 bp):   
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Done.