Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00003.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1185
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36


Found at i:166 original size:21 final size:21

Alignment explanation


    Indices: 137--176  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        127 TTCCCTATCC

                *        *       
        137 ATTTTCATCATTTTCCATACA
          1 ATTTCCATCATTTCCCATACA

                               
        158 ATTTCCATCATTTCCCATA
          1 ATTTCCATCATTTCCCATA

        177 ACCTTCAAGC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.28, C:0.28, G:0.00, T:0.45


Consensus pattern (21 bp):   
ATTTCCATCATTTCCCATACA

Found at i:781 original size:23 final size:24

Alignment explanation


    Indices: 755--799  Score: 56
    Period size: 23  Copynumber: 1.9  Consensus size: 24

        745 TTTATAAAAT

                    *       *       
        755 TTTAAATTTATT-TTCGTTTTACA
          1 TTTAAATTAATTGTTCATTTTACA

                *                 
        778 TTTATATTAATTGTTCATTTTA
          1 TTTAAATTAATTGTTCATTTTA

        800 TATTATTTAC


Statistics
Matches: 18,  Mismatches: 3, Indels: 1
        0.82            0.14        0.05

Matches are distributed among these distances:
  23   10  0.56
  24    8  0.44

ACGTcount: A:0.27, C:0.07, G:0.04, T:0.62


Consensus pattern (24 bp):   
TTTAAATTAATTGTTCATTTTACA
Done.