Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00004.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 408

Length: 680
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.37


Found at i:57 original size:19 final size:19

Alignment explanation


    Indices: 32--86  Score: 60
    Period size: 19  Copynumber: 2.9  Consensus size: 19

         22 TTCTCCTCCA

                     *          
         32 CTTCTTCTTTTTTCATTT-T
          1 CTTCTTCTTCTTTC-TTTCT

            *                  
         51 TTTCTTCTTCTTTCTTTCT
          1 CTTCTTCTTCTTTCTTTCT

                              
         70 CTTCTTC-TCTGTTCTTT
          1 CTTCTTCTTCT-TTCTTT

         87 GCCGAATTCT


Statistics
Matches: 31,  Mismatches: 3, Indels: 4
        0.82            0.08        0.11

Matches are distributed among these distances:
  18    6  0.19
  19   25  0.81

ACGTcount: A:0.02, C:0.25, G:0.02, T:0.71


Consensus pattern (19 bp):   
CTTCTTCTTCTTTCTTTCT
Done.