Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00005.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:1375 original size:30 final size:30

Alignment explanation


    Indices: 1348--1421  Score: 112
    Period size: 30  Copynumber: 2.5  Consensus size: 30

       1338 TTTTCAAGTG

                                        **
       1348 TGGTGGTATTGAGATTTCTTTTGTCAAGCC
          1 TGGTGGTATTGAGATTTCTTTTGTCAAGAA

             *         *                  
       1378 TAGTGGTATTGCGATTTCTTTTGTCAAGAA
          1 TGGTGGTATTGAGATTTCTTTTGTCAAGAA

                          
       1408 TGGTGGTATTGAGA
          1 TGGTGGTATTGAGA

       1422 CTGTATATGG


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  30   38  1.00

ACGTcount: A:0.20, C:0.09, G:0.28, T:0.42


Consensus pattern (30 bp):   
TGGTGGTATTGAGATTTCTTTTGTCAAGAA
Done.