Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00009.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3575
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:3121 original size:266 final size:267

Alignment explanation


    Indices: 2647--3173  Score: 1020
    Period size: 266  Copynumber: 2.0  Consensus size: 267

       2637 GAATACATGA

                                                                             
       2647 GAAATGTAACTGAGCTGAAACCGGAATGGCTGGTCGAAATAGCCCCACATTACTACCAAATGAAA
          1 GAAATGTAACTGAGCTGAAACCGGAATGGCTGGTCGAAATAGCCCCACATTACTACCAAATGAAA

                                            *                                
       2712 GACATCAAAGATGCCTGATCGAAGAAAATGCCGAAGGAACCGGGCCAAGCTACAGGGCGACCGGT
         66 GACATCAAAGATGCCTGATCGAAGAAAATGCCAAAGGAACCGGGCCAAGCTACAGGGCGACCGGT

                                                                             
       2777 GAAAACTGATTGATCCGATGAAAGAACAAGATCATATCCATATTTCATTTTAATCTGTTCTCTAT
        131 GAAAACTGATTGATCCGATGAAAGAACAAGATCATATCCATATTTCATTTTAATCTGTTCTCTAT

                                                   *                         
       2842 TCACTTCC-TTTTTTTTTGAAGAAATTACCATTTCTTATGATTTTTATGTCTTTTTTGTTCAATA
        196 TCACTTCCTTTTTTTTTTGAAGAAATTACCATTTCTTATCATTTTTATGTCTTTTTTGTTCAATA

                   
       2906 GCTGGTC
        261 GCTGGTC

                                                                             
       2913 GAAATGTAACTGAGCTGAAACCGGAATGGCTGGTCGAAATAGCCCCACATTACTACCAAATGAAA
          1 GAAATGTAACTGAGCTGAAACCGGAATGGCTGGTCGAAATAGCCCCACATTACTACCAAATGAAA

                                                                             
       2978 GACATCAAAGATGCCTGATCGAAGAAAATGCCAAAGGAACCGGGCCAAGCTACAGGGCGACCGGT
         66 GACATCAAAGATGCCTGATCGAAGAAAATGCCAAAGGAACCGGGCCAAGCTACAGGGCGACCGGT

                                                                             
       3043 GAAAACTGATTGATCCGATGAAAGAACAAGATCATATCCATATTTCATTTTAATCTGTTCTCTAT
        131 GAAAACTGATTGATCCGATGAAAGAACAAGATCATATCCATATTTCATTTTAATCTGTTCTCTAT

                                                                             
       3108 TCACTTCCTTTTTTTTTTTGAAGAAATTACCATTTCTTATCATTTTTATGTCTTTTTTGTTCAAT
        196 TCACTTCC-TTTTTTTTTTGAAGAAATTACCATTTCTTATCATTTTTATGTCTTTTTTGTTCAAT

             
       3173 A
        260 A

       3174 TATTAGCCTG


Statistics
Matches: 257,  Mismatches: 2, Indels: 2
        0.98            0.01        0.01

Matches are distributed among these distances:
 266  202  0.79
 268   55  0.21

ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Consensus pattern (267 bp):   
GAAATGTAACTGAGCTGAAACCGGAATGGCTGGTCGAAATAGCCCCACATTACTACCAAATGAAA
GACATCAAAGATGCCTGATCGAAGAAAATGCCAAAGGAACCGGGCCAAGCTACAGGGCGACCGGT
GAAAACTGATTGATCCGATGAAAGAACAAGATCATATCCATATTTCATTTTAATCTGTTCTCTAT
TCACTTCCTTTTTTTTTTGAAGAAATTACCATTTCTTATCATTTTTATGTCTTTTTTGTTCAATA
GCTGGTC
Done.